Hey there,
Anybody have a solution to convert fastQC html output to a pdf? If you've got 50 or 500 FASTQs to check, and more importantly share via email, the hmtl output is a little clunky to deal with.
Pierre Lindenbaum suggested apache FOP on twitter. I tried it but it seems it needs an xlt style sheet to work.
I also tried wkhtmltopdf on my linux machine and wkpdf on my macbook. Both of these resulted in blank PDFs.
Opening each html one by one and printing to PDF on my mac works, but is a really really slow option.
Point is I want to script this out, ideally in linux, and get a bunch of PDFs in the end.
FastQC 0.10.0 for Mac is available as a free download on our application library. Our antivirus analysis shows that this Mac download is malware free. The application is included in Developer Tools. Fastqc_v0.10.0.dmg is the frequent file name to indicate the FastQC installer. The script explains what it will do and then pauses before it does it. There are more installation options here (required for OS X Lion 10.7 and below).
Posted below are two links with test data, the first shows what the output looks like in a browser, the second is the full output from fastQC.
Trusted Mac download FastQC 0.10.0. Virus-free and 100% clean download. Get FastQC alternative downloads. If you want to use FastQC with the command line, you can download the « Source Code for FastQC » and follow the next instructions. Installation from source code: Once you have downloaded and unzipped the folder (named FastQC), you have to choose a location for this folder. Download Babraham Bioinformatics Projects. FastQC A quality control application for high throughput sequence data. FastQC v0.11.8 (Mac DMG image). Trusted Windows (PC) download FastQC 1.11.4. Virus-free and 100% clean download. Get FastQC alternative downloads.
Thanks!
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FastQC antivirus report
This download is virus-free.This file was last analysed by Free Download Manager Lib 171 days ago.
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